TY - JOUR
T1 - Diversity of extremely halophilic cultivable prokaryotes in Mediterranean, Atlantic and Pacific solar salterns
T2 - Evidence that unexplored sites constitute sources of cultivable novelty
AU - Viver, Tomeu
AU - Cifuentes, Ana
AU - Díaz, Sara
AU - Rodríguez-Valdecantos, Gustavo
AU - González, Bernardo
AU - Antón, Josefa
AU - Rosselló-Móra, Ramon
N1 - Funding Information:
The current study was funded with the scientific support given by the Spanish Ministry of Economy through the projects CGL2012-39627-C03-01 and CGL2012-39627-C03-03, which were also supported with European Regional Development Fund ( FEDER ) funds, and the preparatory phase of the Microbial Resource Research Infrastructure (MIRRI) funded by the EU (grant number 312251 ). In addition, the funding from competitive research groups (Microbiology) of the Government of the Balearic Islands (also co-supported with FEDER funds), is also acknowledged. TVP acknowledges the predoctoral fellowship of the Ministerio de Economía y Competitividad of the Spanish Government for the FPI fellowship ( Nr BES-2013-064420 ) supporting his research activities. Finally, the authors acknowledge the help and access to their infrastructures of all the salterns sampled in the study: Salines de Campos (Oliver Baker); Salines de S’Avall (Family Zaforteza-Dezcallar); Salinas de Formentera S.L. (David Calzada); Salinas del Bras del Port; Salinas de Janubio and Salinas del Carmen (David Calzada); Salines de la Trinitat (Mateu Lleixà); Salinas de Lo Valdivia (Alejandro Chaparro, Sal de Mar & Turismo Pacífico Central SpA).
Publisher Copyright:
© 2015 Elsevier GmbH.
PY - 2015/6/1
Y1 - 2015/6/1
N2 - The culturable fraction of aerobic, heterotrophic and extremely halophilic microbiota retrieved from sediment and brine samples of eight sampling sites in the Mediterranean, Canary Islands and Chile was studied by means of a tandem approach combining large-scale cultivation, MALDI-TOF MS targeting whole cell biomass, and phylogenetic reconstruction based on 16S rRNA gene analysis. The approach allowed the identification of more than 4200 strains and a comparison between different sampling sites. The results indicated that the method constituted an excellent tool for the discovery of taxonomic novelty. Four new genera and nine new species could be identified within the archaeal family Halobacteriaceae, as well as one new bacterial species, and a representative of Salinibacter ruber phylotype II, a group that had been refractory to isolation for the last fifteen years. Altogether, the results indicated that in order to provide better yields for the retrieval of novel taxa from the environment, performance of non-redundant environment sampling is recommended together with the screening of large sets of strains.
AB - The culturable fraction of aerobic, heterotrophic and extremely halophilic microbiota retrieved from sediment and brine samples of eight sampling sites in the Mediterranean, Canary Islands and Chile was studied by means of a tandem approach combining large-scale cultivation, MALDI-TOF MS targeting whole cell biomass, and phylogenetic reconstruction based on 16S rRNA gene analysis. The approach allowed the identification of more than 4200 strains and a comparison between different sampling sites. The results indicated that the method constituted an excellent tool for the discovery of taxonomic novelty. Four new genera and nine new species could be identified within the archaeal family Halobacteriaceae, as well as one new bacterial species, and a representative of Salinibacter ruber phylotype II, a group that had been refractory to isolation for the last fifteen years. Altogether, the results indicated that in order to provide better yields for the retrieval of novel taxa from the environment, performance of non-redundant environment sampling is recommended together with the screening of large sets of strains.
KW - Halophilic
KW - Large-scale cultivation
KW - MALDI-TOF MS
KW - OPUs
KW - OTUs
KW - Salterns
UR - http://www.scopus.com/inward/record.url?scp=84999465918&partnerID=8YFLogxK
U2 - 10.1016/j.syapm.2015.02.002
DO - 10.1016/j.syapm.2015.02.002
M3 - Article
C2 - 25752803
AN - SCOPUS:84999465918
VL - 38
SP - 266
EP - 275
JO - Systematic and Applied Microbiology
JF - Systematic and Applied Microbiology
SN - 0723-2020
IS - 4
ER -